Ensembl
Pig
BlastView
e.g.
CH242-378C1
Pre Ensembl - release 50 code - Jul 2008
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Important Notice
We now used
BLAT
as our default DNA search. This will make your query faster.
Enter the Query Sequence
Either
Paste sequences (max 30 sequences) in FASTA or plain text:
Or
Upload a file containing one or more FASTA sequences
Or
Enter a sequence ID or accession (EMBL, UniProt, RefSeq)
Or
Enter an existing ticket ID:
dna queries
peptide queries
Select the databases to search against
Select species:
Use 'ctrl' key to select multiple species
Anolis_carolinensis
Cavia_porcellus
Petromyzon_marinus
Sus_scrofa
dna database
Genomic sequence
Genomic sequence (masked)
cDNAs
Ab-initio cDNAs (Genscan/SNAP)
peptide database
Peptides
Ab-initio Peptides (Genscan/SNAP)
Select the Search Tool
BLASTN
BLASTP
BLASTX
BLAT
TBLASTN
TBLASTX
Search sensitivity:
Optimise search parameters to find the following alignments
Exact matches
Near-exact matches
Near-exact matches (oligo)
Near-exact matches (short)
Allow some local missmatch
Distant homologies
No optimisation
About BlastView
BlastView provides an integrated platform for sequence similarity searches against Ensembl databases, offering access to both BLAST and SSAHA programs.
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We would like to hear your impressions of BlastView, especially regarding functionality that you would like to see provided in the future. Many thanks for your time.
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