What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
Preliminary gene annotation in shrew has been generated by alignments of proteins from two different sources: Ensembl human translations from October 2012 genebuild (Ensembl release 69, GRCh37 assembly) as well as a single shrew-specific proteins obtained from UniprotKB. Of the 20,454 human translations 16,209 aligned with a hit coverage of > 50% and a percent identity of > 50%. The single shrew protein also successfully aligned. This gave a total of 16,209 gene models based on the human data and a single model from the shrew protein.
In addition to these models, alignments of sequences from UniProt, UniGene and the ENA vertebrate RNA collection are also provided.
|Assembly:||SorAra2.0, May 2012|
|Golden Path Length:||2,423,158,183|
|Genscan gene predictions:||51,734|