The full gene build of the most recent Chimpanzee assembly, Pan_troglodytes-2.1.4 can be found on our main website.
What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
This preview site includes alignments of chimpanzee EST and cDNA sequences and human cDNA sequences downloaded from the NCBI. Alignments were generated using Exonerate and those with a coverage or percent identity less than 97% were removed, leaving: 8,894 chimpanzee cDNA, 46,222 chimpanzee EST and 1,469,876 Human cDNA alignments. Preliminary gene annotation was generated by aligning chimpanzee proteins from RefSeq and UniProtKB. From these two sources, 1517 coding gene models were predicted. In addition, ab initio gene predictions and alignment of sequences from several public databases (e.g. UniGene, EMBL Vertebrate RNA, UniProtKB) are available.
|Assembly:||Pan_troglodytes-2.1.3, Oct 2010|
|Golden Path Length:||3,307,943,878|
|Genscan gene predictions:||56,616|