Hedgehog

Erinaceus europaeus

Genome assembly: EriEur2 (GCA 000296755.1)

This release features the second draft assembly of the hedgehog (Erinaceus europaeus, GCA_000296755.1, which became available in September 2012. The assembly comprises 5802 toplevel sequences, all of which are unplaced scaffolds (from 225566 contigs). The N50 of the contigs is 21.4 kb and the N50 of the scaffolds is 2.9 Mb. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer.

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Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

This preview site includes alignments of Ensembl human and mouse translations from Ensembl release 74 (December 2013). Of 20749 Ensembl human proteins, 16765 aligned with a percent identity > 50% and coverage > 50%. Of 23033 Ensembl mouse proteins, 17503 aligned with a percent identity > 50% and coverage > 50%. Ab initio gene predictions and alignments of sequences from UniProt, UniGene and the ENA vertebrate RNA collection are also provided.

Genome statistics

Assembly: EriEur2, May 2012
Database version: 75
Base Pairs: 2,333,056,088
Golden Path Length: 2,715,703,478
Genscan gene predictions: 39,012