What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
Preliminary gene annotation in chinese hamster was generated by aligning proteins from Uniprot belonging to the vertebrate subphylum, 97,840 raw gene models were predicted from 108,025 proteins. Ensembl proteins from mouse were also aligned using release 64, 22,473 gene models were predicted. A set containing 1,138 chinese hamster proteins from RefSeq produced 1,303 gene models. 64,528 cDNA sequences from the NCBI were aligned to the genome using Exonerate. 53,549 cDNA alignments were kept with over 95% identity and over 95% coverage. In addition, ab initio gene predictions and BLAST alignments of sequences from several public databases (e.g. UniGene, EMBL Vertebrate RNA, UniProtKB) are available.
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
|Assembly:||CriGri_1.0, Aug 2011|
|Golden Path Length:||2,399,770,464|
|Genscan gene predictions:||53,464|